Welcome to Dragonfly's documentation!
=====================================

Dragonfly is a software package for single-particle diffractive imaging data analysis,
implementing the EMC (Expand-Maximize-Compress) single-particle reconstruction algorithm
using MPI and OpenMP.

.. toctree::
   :maxdepth: 1
   :caption: User Guides

   user-guides/installation
   user-guides/simulation-quickstart
   user-guides/simulator
   user-guides/config
   user-guides/experimental-quickstart
   user-guides/autoplot
   user-guides/frameviewer
   user-guides/faq

.. toctree::
   :maxdepth: 1
   :caption: Background

   background/index

.. toctree::
   :maxdepth: 2
   :caption: API Reference

   api/index

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`